Characterization of lignin-modifying enzymes of the selective white-rot fungus Physisporinus rivulosus

White-rot fungi are wood degrading organisms that are able to decompose all wood polymers; lignin, cellulose and hemicellulose. Especially the selective white-rot fungi that decompose preferentially wood lignin are promising for biopulping applications. In biopulping the pretreatment of wood chips with white-rot fungi enhances the subsequent pulping step and substantially reduces the refining energy consumption in mechanical pulping. Because it is not possible to carry out biopulping in industrial scale as a closed process it has been necessary to search for new selective strains of white-rot fungi which naturally occur in Finland and cause selective white-rot of Finnish wood raw-material. In a screening of 300 fungal strains a rare polypore, Physisporinus rivulosus strain T241i isolated from a forest burn research site, was found to be a selective lignin degrader and promising for the use in biopulping. Since selective lignin degradation is apparently essential for biopulping, knowledge on lignin-modifying enzymes and the regulation of their production by a biopulping fungus is needed. White-rot fungal enzymes that participate in lignin degradation are laccase, lignin peroxidase (LiP), manganese peroxidase (MnP), versatile peroxidase (VP) and hydrogen peroxide forming enzymes. In this study, P. rivulosus was observed to produce MnP, laccase and oxalic acid during growth on wood chips. In liquid cultures manganese and veratryl alcohol increased the production of acidic MnP isoforms detected also in wood chip cultures. Laccase production by P. rivulosus was low unless the cultures were supplemented with sawdust and charred wood, the components of natural growth environment of the fungus. In white-rot fungi the lignin-modifying enzymes are typically present as multiple isoforms. In this study, two MnP encoding genes, mnpA and mnpB, were cloned and characterized from P. rivulosus T241i. Analysis of the N-terminal amino acid sequences of two purified MnPs and putative amino acid sequence of the two cloned mnp genes suggested that P. rivulosus possesses at least four mnp genes. The genes mnpA and mnpB markedly differ from each other by the gene length, sequence and intron-exon structure. In addition, their expression is differentially affected by the addition of manganese and veratryl alcohol. P. rivulosus produced laccase as at least two isoforms. The results of this study revealed that the production of MnP and laccase was differentially regulated in P. rivulosus, which ensures the efficient lignin degradation under a variety of environmental conditions.

Modification of chitin properties for enzymatic deacetylation

Chitins produced via a conventional chemical route as well as from a new biological process were modified to increase the efficiency of enzymatic deacetylation reactions for the production of novel biological chitosan. These modified chitins were reacted for 24h with extracellular fungal enzymes from Colletotrichum lindemuthianum. The chemical and physical properties of the various substrates were analysed and their properties related to the effectiveness in the deacetylation reaction. Modifications of the chitins affected the degree of deacetylation with varied effects. Without further modification to reduce crystallinity and to open up the solid substrate structure, the chitins were found to be poor substrates for the heterogeneous solid-liquid enzymatic catalysis. It was found that the solvent and drying method used in modifying the chitins had significant impact on the final efficiency of the enzymatic deacetylation reaction. The most successful modifications through freeze drying of a colloidal chitin suspension increased the degree of enzymatic deacetylation by 20 fold. These processes reduce the crystallinity of the chitin making it easier for the enzymes to access their internal structure. X-ray diffraction, scanning electron microscopy, thermogravimetric analysis, and BET isotherm analysis are employed to characterise the modified chitins to ascertain the degree of crystallinity, porous structure, surface area, and morphology.

Purification, characterization, and specificity determination of a new serine protease secreted by penicillium waksmanii

The purpose of this work was to purify a protease from Penicillium waksmanii and to determine its biochemical characteristics and specificity. The extracellular protease isolated that was produced by P. waksmanii is a serine protease that is essential for the reproduction and growth of the fungus. The protease isolated showed 32 kDa, and has optimal activity at pH 8.0 and 35 C towards the substrate Abz-KLRSSKQ-EDDnp. The protease is active in the presence of CaCl2, KCl, and BaCl, and partially inhibited by CuCl2, CoCl2 and totally inhibited by AlCl3 and LiCl. In the presence of 1 M urea, the protease remains 50 % active. The activity of the protease increases 60 % when it is exposed to 0.4 % nonionic surfactant-Triton X-100 and loses 10 % activity in the presence of 0.4 % Tween-80. Using fluorescence resonance energy transfer analysis, the protease showed the most specificity for the peptide Abz-KIRSSKQ-EDDnp with k cat/K m of 10,666 mM-1 s-1, followed by the peptide Abz-GLRSSKQ-EDDnp with a k cat/K m of 7,500 mM -1 s-1. Basic and acidic side chain-containing amino acids performed best at subsite S1. Subsites S2, S3, S′ 2, and S′ 1, S ′ 3 showed a preference for binding for amino acids with hydrophobic and basic amino acid side chain, respectively. High values of k cat/K m were observed for the subsites S2, S3, and S′ 2. The sequence of the N-terminus (ANVVQSNVPSWGLARLSSKKTGTTDYTYD) showed high similarity to the fungi Penicillium citrinum and Penicillium chrysogenum, with 89 % of identity at the amino acid level. © 2012 Springer Science+Business Media New York.

Extracellular β-fructofuranosidase from Fusarium graminearum: Stability of the spray-dried enzyme in the presence of different carbohydrates

Microbial enzymes have been used for various biotechnological applications; however, enzyme stabilization remains a challenge for industries and needs to be considered. This study describes the effects of spray-drying conditions on the activity and stability of β-fructofuranosidase from Fusarium graminearum. The extracellular enzyme β-fructofuranosidase was spray dried in the presence of stabilizers, including starch (Capsul) (SC), microcrystalline cellulose (MC), trehalose (TR), lactose (LC) and β-cyclodextrin (CD). In the presence of TR (2% w/v), the enzymatic activity was fully retained. After 1 year of storage, 74% of the enzymatic activity was maintained with the CD stabilizer (10% w/v). The residual activity was maintained as high as 80% for 1 h at 70°C when MC, SC and CD (5% w/v) stabilizers were used. Spray drying with carbohydrates was effective in stabilizing the F. graminearum β-fructofuranosidase, improved enzymatic properties compared to the soluble enzyme and demonstrated a potential use in future biotechnology applications. © 2013 Informa UK Ltd. All rights reserved.

Produção e caracterização da protease coagulante obtida por fermentação submersa a partir do fungo termofílico Thermomucor indicae-seudaticae N31

Pós-graduação em Engenharia e Ciência de Alimentos - IBILCE

Produção de lipase por fermentação em estado sólido em biorreator de leito fixo

Pós-graduação em Engenharia e Ciência de Alimentos - IBILCE

Identificação de inibidores de pectinase fúngica para o controle de formigas cortadeiras

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Secagem de celulases de origem fúngica por spray-drying

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Isolamento e seleção de fungos filamentos produtores de xilanases e celulases utilizando resíduos agroindustriais

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Produção e avaliação da estabilidade de enzimas fúngicas

As enzimas estão presentes em todas as células vivas, onde exercem a função de catalisadores das reações que compõem as vias catabólicas e anabólicas do metabolismo celular. Esses biocatalisadores são moléculas de proteínas e seu poder catalítico está associado à conformação nativa, que depende de condições específicas de pH, temperatura e força iônica do meio. Os micro-organismos são bastante atrativos para a indústria, pois possibilitam a produção de enzimas por processos fermentativos em larga escala com regularidade necessária e simplicidade na requisição nutricional. Assim, embora alguns biocatalisadores sejam extraídos de tecidos animais e vegetais, as enzimas industriais são, em sua maior parte, obtidas a partir de micro-organismos. Este trabalho teve como objetivo a produção das enzimas lipase e β-glucanase a partir dos fungos Aspergillus niger e Trichoderma reesei, respectivamente, em diferentes meios de cultura, para determinar as condições de maior produção da enzima em questão. As enzimas produzidas em agitador orbital foram obtidas a partir da filtração do produto da fermentação, precipitação com sulfato de amônio e liofilização. Após a produção e precipitação a atividade das enzimas e a concentração de proteínas foram quantificadas, os parâmetros cinéticos foram determinados frente a diferentes pHs, temperaturas e força iônica do meio. A lipase apresentou melhor atividade a 30°C e em pH 6,0. A presença dos íons Mg2+ e Zn2+ levaram a um aumento na atividade da enzima. A β-glucanase apresentou maiores atividades quando submetidas a 37°C e pH 5,0. Os íons Mg2+, Cu2+ e Ca2+ induziram melhor a atividade enzimática.

Studies on the application of Myceliophthora thermophila JCP1-4 cellulases cocktail on sugarcane bagasse pretreated by different methods

The hydrolysis step for sugar production in biorefineries is crucial for the sequential processes involved and cellulases cocktails behave differently according to the pretreatment employed. In this study, the application of the cellulases cocktail produced by the fungus Myceliophthora thermophila JCP1-4 was studied on the saccharification of sugarcane bagasse pretreated by ozonolysis and thermic ferric nitrate (TFN), and the results were compared with commercial enzymes (Novozymes Celluclast 1.5L, Novozym 188). The fungal cellulases cocktail hold an activity of FPU:β-glucosidase of 1:4(U/mL); time, temperature, FPU by g of cellulose load and percentage of dry matter (DM) were studied. The analysis of central composite design of TFN pretreated showed that fungal cellulases works better in DM values of 3–3.5% (4.5% for commercial), temperatures higher than 50 °C (<45 °C for commercial) and 15FPU for both; commercial enzymes yielded 7.78 g/L of reducing sugars and the fungal enzymes 5.42 g/L. With the ozone pretreated, the fungal enzymes presented a higher thermostability with faster kinects, being able to produce 5.56 g/L of reducing sugars (60 °C, 8 h), against 5.20 g/L for commercial enzymes (50 °C, 24 h), (10FPU, 3%DM for both). The FPU derivate analysis revels better yields with 7.5FPU, and the increase of DM to 7.5% resulted 13.28 g/L of reducing sugars.

Caracterização transcriptômica de vias metabólicas na formiga Attini Atta sexdens rubropilosa Forel, 1908 (Hymenoptera, Formicidae)

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Determinação do teor de glicose em bagaço de cana-de-açúcar hidrolizado pelo processo de conversão enzimática

The production of ethanol and sugar from sugarcane juice generate as byproduct, the bagasse. Currently, the bagasse, an industrial lignocellulosic biomass, can be used for production of second-generation ethanol, since when it is submitted to hydrolytic processes generates fermentable sugars. The objective of this study was to produce fungal enzymes capable of hydrolyzing this lignocellulosic biomass to generate glucose. For this, we used the mushroom species Lentinula edodes, Pleurotus ostreatus, Pleurotus eryngii, and Pycnoporus sanguineus as potential sources of laccase, manganese peroxidase and lignin peroxidase enzymes, capable of hydrolyzing the crushed sugarcane. The hydrolysis process was performed with the highest enzymatic activities observed from laccase in L. edodes (39.23 U-mL after 25 day incubation), P. ostreatus (2.5 U U-mL after 27 day incubation), P. sanguineus (80 U-mL after 27 days of incubation) and P. eryngii (16.45 U-mL 15 days incubation). MnP and LiP showed no significant results. The enzymatic hydrolysis of sugarcane bagasse in natura (32,17% hemicellulose, cellulose 52,45% and 10,62% lignin) and bagasse hydrolyzate with 7,0% H2SO4 (0,20% hemicellulose, 68,82% to 25,33% cellulose and lignin) were evaluated for each enzymatic obtained. Compared to others, the enzymes produced by P. sanguineus incubated in sugarcane bagasse showed better efficiency resulting in glucose with an average content of 0,14 g-L. Although the levels of glucose determined in this work were low in relation to the literature, it can be stated that the laccase, manganese peroxidase and lignin peroxidase enzymes demonstrated good hydrolytic potential, especially those produced by the fungus P. sanguineus.

Feijões: características químicas e ocorrência de aflatoxinas

As leguminosas, como o feijão, são consideradas importantes fontes de nutrientes para humanos e a contaminação por fungos e consequente produção de micotoxinas pode estar diretamente influenciada pela sua composição química. Alguns compostos estão associados aos mecanismos de defesa das leguminosas atuando como inibidores de enzimas digestivas ou barreiras físicas à patógenos. É o caso dos compostos fenólicos (CF) e algumas estruturas de caráter proteico. O objetivo deste estudo foi verificar a susceptibilidade de feijões à contaminação por aflatoxinas (AFLAs), através da avaliação da presença de compostos inibidores de enzimas fúngicas. Foi realizada a validação de um método para determinação de AFLAs em feijão. Os CF livres (solúveis em metanol), conjugados (solúveis em etanol) e ligados, bem como as diferentes frações proteicas (albumina, globulina, glutelina e prolamina) foram determinadas em 10 amostras de feijão pertencentes às espécies Phaseolus vulgaris, Vigna unguiculata e Vigna angularis. O seu potencial como inibidor de α-amilase foi testado nos extratos fenólicos e protéicos. Os feijões vermelho e carioca apresentaram os maiores teores de CF totais (1766 µg.g -1 e 1190 µg.g -1 , respectivamente) e os feijões fradinho e branco os menores teores (183 µg.g -1 e 192 µg.g -1 ). Os extratos de CF conjugados apresentaram os teores mais elevados de AF, onde os feijões amendoim se destacou pela maior concentração (68 µg.g -1 ) e o feijão azuki pelo menor (28 µg.g -1 ). Nos extratos de CF livres e conjugados, o ácido clorogênico foi o majoritário em 60% dos feijões analisados e nos extratos de CF ligados, o ácido ferúlico foi o majoritário em 90% dos feijões analisados. Com relação às frações proteicas solúveis, o feijão carioca apresentou o maior teor de albumina (559 mg.g -1 ), globulina (164 mg.g -1 ) e glutelina (325 mg.g -1 ). Com relação à fração prolamina, o feijão preto (brasileiro e chinês) apresentou o maior teor (64 e 65 mg.g -1 , respectivamente), seguido pelo feijão carioca (54 mg.g -1 ). Os limites de detecção (LDm) obtidos para o método de determinação de AFLAs foram de 2,4 µg.kg-1 ; 0,036 µg.kg-1 e 0,06 µg.kg-1 para as AFLAs B1, B2 e G2 e os limites de quantificação (LQm) foram de 4,8 µg.kg-1 (AFLAB1); 0,12 µg.kg- 1 (AFLA B2 e G2). Não foram detectadas AFLAs B1, B2, G1 e G2 nos feijões analisados. Os CF dos extratos etanólicos dos feijões amendoim e azuki e os extratos contendo as proteínas solúveis em etanol dos feijões carioca e fradinho foram testados quanto ao seu potencial para inibição da α-amilase de Aspergillus oryzae (atividade de 4,8 mg amido hidrolisado.mg proteína-1 .mL-1 ). O extrato proteico do feijão fradinho se destacou, pois atingiu um percentual de inibição específica de aproximadamente 56%. Os CF apresentaram uma tendência à inibição incompetitiva e os extratos proteicos não apresentaram um comportamento de inibição que permitisse definir o mecanismo de inibição. Os extratos protéicos e fenólicos dos feijões mostraram ser capazes de inibir a amilase fúngica sugerindo que este fato pode estar associado a ausência da presença de AFLAs nas amostras analisadas.

Identification of the fungal catabolic D-galacturonate pathway

Pectin is a natural polymer consisting mainly of D-galacturonic acid monomers. Microorganisms living on decaying plant material can use D-galacturonic acid for growth. Although bacterial pathways for D-galacturonate catabolism had been described previously, no eukaryotic pathway for D-galacturonate catabolism was known at the beginning of this work. The aim of this work was to identify such a pathway. In this thesis the pathway for D-galacturonate catabolism was identified in the filamentous fungus Trichoderma reesei. The pathway consisted of four enzymes: NADPH-dependent D-galacturonate reductase (GAR1), L-galactonate dehydratase (LGD1), L-threo-3-deoxy-hexulosonate aldolase (LGA1) and NADPH-dependent glyceraldehyde reductase (GLD1). In this pathway D-galacturonate was converted to pyruvate and glycerol via L-galactonate, L-threo-3-deoxy-hexulosonate and L-glyceraldehyde. The enzyme activities of GAR1, LGD1 and LGA1 were present in crude mycelial extract only when T. reesei was grown on D-galacturonate. The activity of GLD1 was equally present on all the tested carbon sources. The corresponding genes were identified either by purifying and sequencing the enzyme or by expressing genes with homology to other similar enzymes in a heterologous host and testing the activities. The new genes that were identified were expressed in Saccharomyces cerevisiae and resulted in active enzymes. The GAR1, LGA1 and GLD1 were also produced in S. cerevisiae as active enzymes with a polyhistidine-tag, and purified and characterised. GAR1 and LGA1 catalysed reversible reactions, whereas only the forward reactions were observed for LGD1 and GLD1. When gar1, lgd1 or lga1 was deleted in T. reesei the deletion strain was unable to grow with D-galacturonate as the only carbon source, demonstrating that all the corresponding enzymes were essential for D-galacturonate catabolism and that no alternative D-galacturonate pathway exists in T. reesei. A challenge for biotechnology is to convert cheap raw materials to useful and more valuable products. Filamentous fungi are especially useful for the conversion of pectin, since they are efficient producers of pectinases. Identification of the fungal D-galacturonate pathway is of fundamental importance for the utilisation of pectin and its conversion to useful products.